Secondary structures in polyoma DNA.

Secondary structures of DNA.

In view of the differences of the X-ray diffraction patterns for DNA fibers at 66 and 92 per cent relative humidities, it is proposed that the secondary structure of DNA consists of two partially intercalated double helices at 92 per cent. Possible biological implications are discussed.

Targeting DNA secondary structures.

DNA secondary structures containing regions of single-stranded DNA have now been identified in the genomic DNA of a number of prokaryotic and eukaryotic species, including humans. Many of these secondary structures are associated with regions of DNA involved in regulation of transcription: promoters or upstream elements. The secondary structures involved appear likely to be hairpin or cruciform...

The replication of polyoma DNA.

Physicochemical Position-Dependent Properties in the Protein Secondary Structures

Background: Establishing theories for designing arbitrary protein structures is complicated and depends on understanding the principles for protein folding, which is affected by applied features. Computer algorithms can reach high precision and stability in computationally designing enzymes and binders by applying informative features obtained from natural structures. Methods: In this study, a ...

A simple motif for protein recognition in DNA secondary structures.

DNA in a single-stranded form (ssDNA) exists transiently within the cell and comprises the telomeres of linear chromosomes and the genomes of some DNA viruses. As with RNA, in the single-stranded state, some DNA sequences are able to fold into complex secondary and tertiary structures that may be recognized by proteins and participate in gene regulation. To better understand how such DNA elemen...